Treefit for Python - The first software for quantitative trajectory inference

This is an implementation of Treefit in Python.

Treefit is a novel data analysis toolkit that helps you perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.

Contents:

• Install
• Treefit - Getting started
  • 1. Generating toy data
  • 2. Analyzing the data
  • 3. Interpreting the results
• API reference
  • treefit
  • treefit.fit
  • treefit.data
• Release notes
  • 1.0.0 - 2020-03-06